From a62114c91f2070c8c8453d117f3d81dc113e41ff Mon Sep 17 00:00:00 2001
From: Biswakalyan Bhuyan <biswa@surgot.in>
Date: Mon, 25 Mar 2024 16:43:09 +0530
Subject: dotfile update

---
 zsh/oh-my-zsh/plugins/samtools/_samtools | 40 --------------------------------
 1 file changed, 40 deletions(-)
 delete mode 100644 zsh/oh-my-zsh/plugins/samtools/_samtools

(limited to 'zsh/oh-my-zsh/plugins/samtools/_samtools')

diff --git a/zsh/oh-my-zsh/plugins/samtools/_samtools b/zsh/oh-my-zsh/plugins/samtools/_samtools
deleted file mode 100644
index ddb002a..0000000
--- a/zsh/oh-my-zsh/plugins/samtools/_samtools
+++ /dev/null
@@ -1,40 +0,0 @@
-#compdef samtools
-#autoload
-
-local curcontext="$curcontext" state line ret=1
-local -a _files
-
-_arguments -C \
-  '1: :->cmds' \
-  '2:: :->args' && ret=0
-
-case $state in
-  cmds)
-    _values "samtools command" \
-        "view[SAM<->BAM conversion]" \
-        "sort[sort alignment file]" \
-        "mpileup[multi-way pileup]" \
-        "depth[compute the depth]" \
-        "faidx[index/extract FASTA]" \
-        "tview[text alignment viewer]" \
-        "index[index alignment]" \
-        "idxstats[BAM index stats (r595 or later)]" \
-        "fixmate[fix mate information]" \
-        "flagstat[simple stats]" \
-        "calmd[recalculate MD/NM tags and '=' bases]" \
-        "merge[merge sorted alignments]" \
-        "rmdup[remove PCR duplicates]" \
-        "reheader[replace BAM header]" \
-        "cat[concatenate BAMs]" \
-        "bedcov[read depth per BED region]" \
-        "targetcut[cut fosmid regions (for fosmid pool only)]" \
-        "phase[phase heterozygotes]" \
-        "bamshuf[shuffle and group alignments by name]"
-    ret=0
-    ;;
-  *)
-    _files
-    ;;
-esac
-
-return ret
-- 
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