dotfile update

2 files changed, 0 insertions, 45 deletions

diff --git a/zsh/oh-my-zsh/plugins/samtools/README.md b/zsh/oh-my-zsh/plugins/samtools/README.md
deleted file mode 100644
index f4baf41..0000000
--- a/zsh/oh-my-zsh/plugins/samtools/README.md
+++ /dev/null
@@ -1,5 +0,0 @@
-# Samtools plugin
-
-This plugin adds support for [samtools](http://www.htslib.org/):
-
-* Adds autocomplete options for all samtools sub commands.
diff --git a/zsh/oh-my-zsh/plugins/samtools/_samtools b/zsh/oh-my-zsh/plugins/samtools/_samtools
deleted file mode 100644
index ddb002a..0000000
--- a/zsh/oh-my-zsh/plugins/samtools/_samtools
+++ /dev/null
@@ -1,40 +0,0 @@
-#compdef samtools
-#autoload
-
-local curcontext="$curcontext" state line ret=1
-local -a _files
-
-_arguments -C \
-  '1: :->cmds' \
-  '2:: :->args' && ret=0
-
-case $state in
-  cmds)
-    _values "samtools command" \
-        "view[SAM<->BAM conversion]" \
-        "sort[sort alignment file]" \
-        "mpileup[multi-way pileup]" \
-        "depth[compute the depth]" \
-        "faidx[index/extract FASTA]" \
-        "tview[text alignment viewer]" \
-        "index[index alignment]" \
-        "idxstats[BAM index stats (r595 or later)]" \
-        "fixmate[fix mate information]" \
-        "flagstat[simple stats]" \
-        "calmd[recalculate MD/NM tags and '=' bases]" \
-        "merge[merge sorted alignments]" \
-        "rmdup[remove PCR duplicates]" \
-        "reheader[replace BAM header]" \
-        "cat[concatenate BAMs]" \
-        "bedcov[read depth per BED region]" \
-        "targetcut[cut fosmid regions (for fosmid pool only)]" \
-        "phase[phase heterozygotes]" \
-        "bamshuf[shuffle and group alignments by name]"
-    ret=0
-    ;;
-  *)
-    _files
-    ;;
-esac
-
-return ret